Florescent Proteins
While zoox supports life functions of coral, and gives it the much dispised brown color, the florescent proteins (FP) are the reason why we try so hard to keep corals in our aquarium.
FP are complex molecules which require a lot of resources to produce. If coral pays hefty price for these proteins, they don't do it just to please our eyes. In fact, FP are essential for coral to survive.
FP and Zoox
One important reason for the existance of FP is that zoox are very selective when it comes to the type of light it can use. As it turns out, zoox can only make use of light of certain wavelength (can think of it as color). The wavelengths of light useful for photosynthesis is called PAR.
PAR spectrum (https://images.app.goo.gl/v49E7u1a1N1ZADo87 Wikipedia )
The light energy unabsorbed by zoox are wasted, or worse, can cause photo damage to the coral tissue. Fortunately, coral evolved a mechanism to deal with this two challenges: Florescent Proteins.
Spectrum Shifting and Light
In a nut shell, FP absorbs a light of a certain wavelength (this is called excitation), then release the light at a longer wavelength (called emission). This achieve two goals:
1. When the wavelength of the light is increased, the energy of the photon is lowered. So even if the light is unused by the zoox, it will not cause too much harm to the coral
2. When the re-emitted light is at the correct wavelength to be used by zoox, the light energy is not wasted, and coral will gain more food in return.
Therefore, it is not difficult to infer the factors which drives the coral to produce FP, and achieve amazing colours.
The light must be intense enough such that corals require protection from photo damage. The spectrum of the light needs to be predominantly of lower wavelength (higher Kelvin rating) so that they allow the FB to shift the wavelength up. Hence we arrive at standard reef lighting formula : bright, blue dominant light.
[Interlude: for modern lightsets, even for day light appearance, the spectrum is still very blue. Our eyes are not sensitive to blue lights. Therefore even with the elevated blue channels, the aquarium can still have the daylight appearance]
The advent of LEDs brings about a second challenge. Unlike MH or T5, the spectrum of LED light sets are the combination of each diodes. These diodes have very narrow emission spectra. Therefore, although a led light might follow a certain spectrum profile, it is possible for some wavelengths to be very weak, or even nonexistent. If the excitation wavelength for a particular FP is absent, then such florescece will not be observed.
I believe, when it comes to coral fluorescence, the most important factor is the light. Of course, the coral must be healthy.
Building Florescent Proteins
Many reefers have read about the trace elements. Iron for green, potassium for red, iodine for blue etc etc. Like wise, reefing products reinforce this idea and have various "color" additives based on trace elements.
With all these information, it's fair to assume that these trace elements are in the FPs, right?
Turns out this is very far from the truth.
The animation below shows a typical green fluorescent protein (GFP).
(GFP Movie showing entire structure and zoom in to fluorescent chromophore. (Erin, https://en.m.wikipedia.org/wiki/Green_fluorescent_protein#/media/File%3AGFP_Fluorescent_Protein_Movie.gif)
The exterior of the protein is a structure called beta-barrel (green). This structure shields the central chromatophore (yellow) from the surrounding environment. The chromatophore is responsible for the florescence, while the beta-barrel minimizes effect of interference from surrounding environment. Where are the trace elements? Is there an iron atom/ion in the chromatophore? Turns out there is none. There is no heavy metals of any kind in the FPs. Even more surprising, is the fact that many of those "trace elements" can have a chemical quenching effect, dramatically reduce the florescece of the FPs.
What is needed for FP building, is amino acids, not trace elements.
The Paradox
Therefore, the paradox. On one hand trace additives are not a part of FP. On the other hand, adding trace additive improve the color of the corals.
Why?
I'm puzzled. Could any one suggest a possible theory?